Experiment summary for ENCSR608VNA
doi:10.17989/ENCSR608VNA
Summary
- Status
- released
- Assay
- ChIP-seq (Histone ChIP-seq)
- Target
- H3K4me3
- Biosample summary
- Homo sapiens neural cell originated from H1
- Biosample Type
- in vitro differentiated cells
- Replication type
- isogenic
- Nucleic acid type
- DNA
- Size range
- 300-800 [1-1]300-800 [1-2]200-600 [2-1]
- Fragmentation methods
- sonication (generic) [1-1]sonication (generic) [1-2]shearing (Covaris generic) [2-1]
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Bradley Bernstein, Broad
- Award
- U54HG006991 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 12
- Date submitted
- March 19, 2014
- Date released
- July 11, 2014
- Reference Epigenome
- ENCSR477LDX
- Submitter comment
- As of June 22, 2017, control ENCSR308JFE requires new bams. New files will be processed for its downstream experiments.
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
---|---|---|---|---|---|
1 | 1 | Homo sapiens male embryo neural in vitro differentiated cells originated from H1 | ENCBS504GFW | ENCAB000AUU | ENCLB805RMU |
1 | 2 | Homo sapiens male embryo neural in vitro differentiated cells originated from H1 | ENCBS504GFW | ENCAB000AUU | ENCLB354PZC |
2 | 1 | Homo sapiens male embryo neural in vitro differentiated cells originated from H1 | ENCBS737HIZ | ENCAB582RSV | ENCLB922CKK |