Experiment summary for ENCSR606NTQ

doi:10.17989/ENCSR606NTQ

Summary

Status
released
Assay
siRNA knockdown followed by RNA-seq (siRNA RNA-seq)
Target
hay
Biosample summary
Drosophila melanogaster strain Oregon-R S2 expressing RNAi targeting D. melanogaster hay
Biosample Type
cell line
Replication type
isogenic
Description
RNAi knockdown against hay in S2-DRSC cell line followed by total RNA-seq (Oligo-dT selected, double stranded cDNA).
Nucleic acid type
RNA
Size range
>200
Extraction method
Trizol
Strand specificity
unstranded
Spike-ins datasets
ENCSR358OMW

Attribution

modENCODE Project
Lab
Brenton Graveley, UConn
Award
U01HG004271 (Susan Celniker, LBNL)
Project
modENCODE
External resources
References
Aliases
brenton-graveley:S2-DRSC-CG8019-RNAi
Date submitted
March 31, 2014
Date released
March 31, 2014
Gene Silencing Series
ENCSR087TUT 

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Library
21Drosophila melanogaster strain Oregon-R S2 cell line expressing RNAi targeting D. melanogaster hayENCBS180ZDIENCGM949NPUENCLB484CCA
11Drosophila melanogaster strain Oregon-R S2 cell line expressing RNAi targeting D. melanogaster hayENCBS126OLIENCGM949NPUENCLB832HYH