Experiment summary for ENCSR604KUU
doi:10.17989/ENCSR604KUU
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- eyg-1
- Biosample summary
- Caenorhabditis elegans strain OP443 whole organism hermaphrodite late embryo 4 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans eyg-1
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing Y53C12C.1-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:Y53C12C.1-OP443-LE
- Date submitted
- May 9, 2016
- Date released
- September 29, 2016
- Submitter comment
- ENCFF670PDY, ENCFF164NRT, ENCFF745NWF and ENCFF645WCG were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Caenorhabditis elegans strain OP443 hermaphrodite late embryo 4 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans eyg-1 | ENCBS542LQC | ENCGM878NBX | ENCAB728YTO | ENCLB288RAH |
| 1 | 1 | Caenorhabditis elegans strain OP443 hermaphrodite late embryo 4 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans eyg-1 | ENCBS742TRJ | ENCGM878NBX | ENCAB728YTO | ENCLB226IXW |