Experiment summary for ENCSR591QYK

Summary

Status
released
Assay
CRISPRi followed by RNA-seq (CRISPRi RNA-seq)
Target
TRIM28
Biosample summary
Homo sapiens K562 genetically modified using CRISPR
Biosample Type
cell line
Replication type
isogenic
Description
RNA-seq on K562 cells treated by CRISPR interference targeting TRIM28.
Nucleic acid type
RNA
Size range
>200
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
Aliases
michael-snyder:E-K562-CRISPRi-TRIM28
Date submitted
October 31, 2017
Date released
November 18, 2017

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsLibrary
11K562 cell line genetically modified (interference) using CRISPR targeting TRIM28ENCBS180EYOENCGM571MKLENCLB635CHZ
21K562 cell line genetically modified (interference) using CRISPR targeting TRIM28ENCBS342LZYENCGM571MKLENCLB128IOG