Experiment summary for ENCSR582OWB

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Drosophila melanogaster strain CG34406-GFP whole organism prepupa genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG44002-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:CG44002-GFP
Date submitted
April 9, 2016
Date released
July 6, 2016
Submitter comment
ENCFF220KPA, ENCFF220KPA, ENCFF276ZBC, ENCFF276ZBC, ENCFF321PLT, ENCFF919LGS were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
31strain CG34406-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG34406ENCBS351BWZENCGM376YRPENCAB728YTOENCLB913SIG
11strain CG34406-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG34406ENCBS292QDFENCGM376YRPENCAB728YTOENCLB158ARD
21strain CG34406-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG34406ENCBS547JAEENCGM376YRPENCAB728YTOENCLB210CJS