Experiment summary for ENCSR582OWB
doi:10.17989/ENCSR582OWB
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CG34406
- Biosample summary
- Drosophila melanogaster strain CG34406-GFP whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG44002
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing CG44002-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CG44002-GFP
- Date submitted
- April 9, 2016
- Date released
- July 6, 2016
- Submitter comment
- ENCFF220KPA, ENCFF220KPA, ENCFF276ZBC, ENCFF276ZBC, ENCFF321PLT, ENCFF919LGS were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
3 | 1 | Drosophila melanogaster strain CG34406-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG44002 | ENCBS351BWZ | ENCGM376YRP | ENCAB728YTO | ENCLB913SIG |
1 | 1 | Drosophila melanogaster strain CG34406-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG44002 | ENCBS292QDF | ENCGM376YRP | ENCAB728YTO | ENCLB158ARD |
2 | 1 | Drosophila melanogaster strain CG34406-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG44002 | ENCBS547JAE | ENCGM376YRP | ENCAB728YTO | ENCLB210CJS |