Experiment summary for ENCSR580SVE
doi:10.17989/ENCSR580SVE
Summary
- Status
- released
- Assay
- single-nucleus ATAC-seq (snATAC-seq)
- Biosample summary
- Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue postnatal (0 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- snATAC-seq of mouse forebrain
- Nucleic acid type
- DNA
- Size range
- 200-750
- Lysis method
- [NPB (5% BSA (Sigma), 0.2% IGEPAL-CA630 (Sigma), cOmplete (Roche), 1mM DTT in PBS)]
- Fragmentation methods
- chemical (Nextera tagmentation)
- Size selection method
- AMPure XP bead purification
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Bing Ren, UCSD
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- Aliases
- bing-ren:p0_forebrain_snATAC
- Date submitted
- December 3, 2018
- Date released
- April 19, 2019
- Organism Development Series
- ENCSR872HWD
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 1 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex postnatal (0 days) forebrain tissue | ENCBS554AAA | ENCLB710NFW |
| 1 | 1 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex postnatal (0 days) forebrain tissue | ENCBS038AAA | ENCLB866UFV |