Experiment summary for ENCSR575DJF
doi:10.17989/ENCSR575DJF
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ham-2
- Biosample summary
- Caenorhabditis elegans strain OP639 (wgIs639 [ham-2::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) whole organism mixed stage (embryo) (3 hours) using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans ham-2
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic worms expressing ham-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:HAM-2_OP639_EM
- Date submitted
- May 30, 2018
- Date released
- June 12, 2018
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 7 | 1 | Caenorhabditis elegans strain OP639 (wgIs639 [ham-2::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans ham-2 | ENCBS931CBF | ENCGM204KRB | ENCAB728YTO | ENCLB260VCT |
| 6 | 1 | Caenorhabditis elegans strain OP639 (wgIs639 [ham-2::TY1::EGFP::3xFLAG + unc-119(+)];unc-119 (tm4063)) mixed sex mixed stage (embryo) (3 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans ham-2 | ENCBS482VMZ | ENCGM204KRB | ENCAB728YTO | ENCLB362CLT |