Experiment summary for ENCSR553UWG
doi:10.17989/ENCSR553UWG
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 0.5 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 0.5 hours.
- Treatments
- 100 nM dexamethasone (CHEBI:41879) for 0.5 hours
- Nucleic acid type
- DNA
- Library starting quantity
- 7ng
- Size range
- >200
- Fragmentation methods
- sonication (Bioruptor Twin)
- Size selection method
- dual SPRI
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
Genomics of Gene Regulation Project
- Lab
- Tim Reddy, Duke
- Award
- U01HG007900 (Tim Reddy, Duke)
- Project
- GGR
- External resources
- Aliases
- tim-reddy:CTCF.t05
- Date submitted
- December 15, 2016
- Date released
- December 20, 2016
- Treatment Time Series
- ENCSR738NGQ
- Annotation (BPNet-model)
- Tags
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 0.5 hours | ENCBS094BQG | ENCAB809HPR | ENCLB378WUL |
| 2 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 0.5 hours | ENCBS013GXJ | ENCAB809HPR | ENCLB765SUS |
| 3 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 0.5 hours | ENCBS957SRX | ENCAB809HPR | ENCLB004QFM |