Experiment summary for ENCSR552OIV
doi:10.17989/ENCSR552OIV
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- sea-2
- Biosample summary
- Caenorhabditis elegans strain OP193 (unc-119(ed3); wgIs193(sea-2::TY1 EGFP FLAG C; unc-119)) whole organism L3 larva genetically modified (insertion) using bombardment targeting C. elegans sea-2
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq against eGFP-sea-2 in L3 larva worms.
- Nucleic acid type
- DNA
- Size range
- 150-350
- Fragmentation methods
- sonication (generic microtip)
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
modENCODE Project
- Lab
- Michael Snyder, Stanford
- Award
- U01HG004267 (Michael Snyder, Stanford)
- Project
- modENCODE
- External resources
- Aliases
- modencode:3082
- Date submitted
- March 31, 2014
- Date released
- March 31, 2014
- Submitter comment
- We had previously erroneously specified the target of this ChIP-seq experiment to be eGFP-sea-1. It is in fact, eGFP-sea-2 and we have corrected the metadata error.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP193 (unc-119(ed3); wgIs193(sea-2::TY1 EGFP FLAG C; unc-119)) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans sea-2 | ENCBS813ONM | ENCGM281IBK | ENCAB435FBQ | ENCLB401JOY |
| 2 | 1 | Caenorhabditis elegans strain OP193 (unc-119(ed3); wgIs193(sea-2::TY1 EGFP FLAG C; unc-119)) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans sea-2 | ENCBS135QPT | ENCGM281IBK | ENCAB435FBQ | ENCLB807PWM |
| 3 | 1 | Caenorhabditis elegans strain OP193 (unc-119(ed3); wgIs193(sea-2::TY1 EGFP FLAG C; unc-119)) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans sea-2 | ENCBS089YMF | ENCGM281IBK | ENCAB435FBQ | ENCLB264XGZ |
| 4 | 1 | Caenorhabditis elegans strain OP193 (unc-119(ed3); wgIs193(sea-2::TY1 EGFP FLAG C; unc-119)) mixed sex L3 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans sea-2 | ENCBS173LIC | ENCGM281IBK | ENCAB435FBQ | ENCLB504AXA |