Experiment summary for ENCSR552HTC

Summary

Status
released
Assay
CRISPRi followed by RNA-seq (CRISPRi RNA-seq)
Target
TFDP1
Biosample summary
Homo sapiens K562 genetically modified using CRISPR
Biosample Type
cell line
Replication type
isogenic
Description
RNA-seq on K562 cells treated by CRISPR interference targeting TFDP1.
Nucleic acid type
RNA
Size range
>200
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
Aliases
michael-snyder:E-K562-CRISPRi-TFDP1
Date submitted
October 31, 2017
Date released
November 20, 2017

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsLibrary
11K562 cell line genetically modified (interference) using CRISPR targeting TFDP1ENCBS461XSFENCGM999TUGENCLB210ZET
21K562 cell line genetically modified (interference) using CRISPR targeting TFDP1ENCBS650AIVENCGM999TUGENCLB074XVL