Experiment summary for ENCSR548OPZ

doi:10.17989/ENCSR548OPZ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
hrde-1
Biosample summary
Caenorhabditis elegans strain YL557 whole organism hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans hrde-1
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing WAGO-9-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:WAGO-9-YL557-yAd
Date submitted
July 29, 2015
Date released
May 24, 2016
Submitter comment
ENCFF247IHE, ENCFF414QST, ENCFF542HMD, ENCFF974IHW were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
11Caenorhabditis elegans strain YL557 hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans hrde-1ENCBS976THXENCGM972PAWENCAB728YTOENCLB026GVY
21Caenorhabditis elegans strain YL557 hermaphrodite young adult 48 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans hrde-1ENCBS527YFZENCGM972PAWENCAB728YTOENCLB079NTF