Experiment summary for ENCSR545YBD
doi:10.17989/ENCSR545YBD
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- K562 in situ Hi-C experiment
- Nucleic acid type
- DNA
- Library starting quantity
- 5000000cells [3-2]1000000cells [4-1]1000000cells [4-2]1000000cells [4-3]5000000cells [3-1]2500000cells [1-2]2500000cells [2-1]2500000cells [2-3]2500000cells [2-2]5000000cells [1-1]2500000cells [2-4]
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500, Illumina HiSeq X Ten
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:ivan1-experiment-k562-insitu
- Date submitted
- April 4, 2018
- Date released
- October 29, 2018
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 3 | 2 | Homo sapiens K562 cell line | ENCBS676XGX | ENCLB754QRY |
| 4 | 1 | Homo sapiens K562 cell line | ENCBS619EFN | ENCLB047EPU |
| 4 | 2 | Homo sapiens K562 cell line | ENCBS619EFN | ENCLB181PNN |
| 4 | 3 | Homo sapiens K562 cell line | ENCBS619EFN | ENCLB771NVF |
| 3 | 1 | Homo sapiens K562 cell line | ENCBS676XGX | ENCLB827DSN |
| 1 | 2 | Homo sapiens K562 cell line | ENCBS122OOP | ENCLB470UUQ |
| 2 | 1 | Homo sapiens K562 cell line | ENCBS037RBR | ENCLB243GST |
| 2 | 3 | Homo sapiens K562 cell line | ENCBS037RBR | ENCLB127KCJ |
| 2 | 2 | Homo sapiens K562 cell line | ENCBS037RBR | ENCLB598XMB |
| 1 | 1 | Homo sapiens K562 cell line | ENCBS122OOP | ENCLB941YRT |
| 2 | 4 | Homo sapiens K562 cell line | ENCBS037RBR | ENCLB463ZSY |