Experiment summary for ENCSR544CTM
doi:10.17989/ENCSR544CTM
Summary
- Status
- released
- Assay
- eCLIP (Control eCLIP)
- Control type
- mock input
- Biosample summary
- Homo sapiens HepG2
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- eCLIP control experiment on HepG2 against TRA2A
- Nucleic acid type
- RNA
- Size range
- 175-300
- Fragmentation methods
- see document
- Size selection method
- agarose gel extraction
- Strand specificity
- Strand-specific
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Gene Yeo, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- Aliases
- gene-yeo:218-control
- Date submitted
- March 22, 2016
- Date released
- July 15, 2015
- Submitter comment
- Fastq files ENCFF976JEU and ENCFF411KJR contain reads of mixed lengths. Read length followed by number of reads: ENCFF976JEU (25, 163098), (35, 36611), (36, 45644), (37, 53194), (38, 60825), (39, 75821), (40, 86858), (41, 89132), (42, 104483), (43, 110037), (44, 113086), (45, 126051), (46, 127678), (47, 139229), (48, 226083), (49, 494732), (50, 1085661), (51, 4265526); and ENCFF411KJR (30, 201465), (31, 46411), (32, 54410), (33, 62092), (34, 77334), (35, 88176), (36, 90197), (37, 105529), (38, 111058), (39, 113445), (40, 124810), (41, 129223), (42, 140540), (43, 226368), (44, 533350), (45, 1168612), (46, 4130729).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens HepG2 cell line | ENCBS533IVT | ENCLB859OOD |