Experiment summary for ENCSR537QPX

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Caenorhabditis elegans strain OP598 (unc-119(tm4063) III; wgIs598) whole organism young adult 63 hours post synchronization at L1 larva starved after bleaching stage genetically modified using bombardment
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing T26A5.8-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation method
sonication (generic microtip)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:T26A5.8-OP598-yAd
Date submitted
October 4, 2016
Date released
October 10, 2016
Submitter comment
ENCFF225BRN, ENCFF031CDK, ENCFF180PVU, ENCFF033QAJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
41strain OP598 (unc-119(tm4063) III; wgIs598) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting eGFP-T26A5.8ENCBS937IYBENCGM663GNFENCAB728YTOENCLB422GEM
31strain OP598 (unc-119(tm4063) III; wgIs598) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting eGFP-T26A5.8ENCBS438SZQENCGM663GNFENCAB728YTOENCLB565OWO