Experiment summary for ENCSR530MRJ

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Drosophila melanogaster strain CG8319-GFP whole organism prepupa genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG8319-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:CG8319-GFP
Date submitted
April 9, 2016
Date released
July 6, 2016
Submitter comment
ENCFF439NQS, ENCFF080GZF were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
31strain CG8319-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG8319ENCBS413HYMENCGM175KQWENCAB728YTOENCLB663BMU
11strain CG8319-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG8319ENCBS563WXQENCGM175KQWENCAB728YTOENCLB692IGJ
21strain CG8319-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG8319ENCBS012NTOENCGM175KQWENCAB728YTOENCLB406UHX