Experiment summary for ENCSR521RAL

doi:10.17989/ENCSR521RAL

Summary

Status
released
Assay
ATAC-seq
Biosample summary
Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 3.5 days
Biosample Type
primary cell
Replication type
anisogenic
Description
ATAC-seq on primary keratinocytes in day 4.0 of differentiation
Treatments
1.2 mM calcium (CHEBI:86158) for 3.5 days
Nucleic acid type
DNA
RNA integrity number
8.8 [1-1]8.8 [1-2]6.8 [2-1]6.8 [2-2]6.8 [2-3]6.8 [2-4]8.8 [1-3]6.8 [2-5]8.8 [1-4]

Attribution

Genomics of Gene Regulation Project
Lab
Will Greenleaf, Stanford
Award
U01HG007919 (Michael Snyder, Stanford)
Project
GGR
External resources
Aliases
michael-snyder:ggr-skin-atacseq-day40
Date submitted
January 27, 2017
Date released
October 10, 2017
Treatment Time Series
ENCSR968JDE 
Annotation (gkmsvm-model)

Anisogenic replicates

Anisogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS870NXIENCLB788BWY
12Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS870NXIENCLB490ZOG
21Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS081FMTENCLB029WIY
22Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS081FMTENCLB316GSQ
23Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS081FMTENCLB204YKK
24Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS081FMTENCLB406MWM
13Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS870NXIENCLB081PBN
25Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS081FMTENCLB118KNG
14Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 daysENCBS870NXIENCLB414PDL