Experiment summary for ENCSR520BZQ
doi:10.17989/ENCSR520BZQ
Summary
- Status
- released
- Assay
- eCLIP
- Target
- HNRNPU
- Biosample summary
- Homo sapiens K562
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- eCLIP experiment on K562 against HNRNPU
- Nucleic acid type
- RNA
- Size range
- 175-300
- Fragmentation methods
- see document
- Size selection method
- agarose gel extraction
- Strand specificity
- Strand-specific
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Gene Yeo, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- References
- Aliases
- gene-yeo:249
- Date submitted
- March 21, 2016
- Date released
- July 15, 2015
- Submitter comment
- Fastq files ENCFF384LLO, ENCFF089LNF, ENCFF145OZZ, and ENCFF253HOY contain reads of mixed lengths. Read length followed by number of reads: ENCFF384LLO (43, 12956734), (48, 35715368); ENCFF089LNF (43, 7535217), (48, 17775106); ENCFF145OZZ (45, 12956734), (50, 35715368); and ENCFF253HOY (45, 7535217), (50, 17775106).
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Antibody | Library |
|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens K562 cell line | ENCBS218QRN | ENCAB502MPG | ENCLB174IHH |
| 2 | 1 | Homo sapiens K562 cell line | ENCBS994EIH | ENCAB502MPG | ENCLB935EDZ |