Experiment summary for ENCSR518FUJ
doi:10.17989/ENCSR518FUJ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- pdm3
- Biosample summary
- Drosophila melanogaster strain pdm3-GFP whole organism prepupa at white prepupa stage genetically modified (insertion) using site-specific recombination targeting D. melanogaster pdm3
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing pdm3-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:pdm3-GFP
- Date submitted
- July 24, 2015
- Date released
- July 6, 2016
- Submitter comment
- ENCFF672XXJ, ENCFF182VXQ were revoked because a software bug accidentally truncated the file content. The submitters have provided replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Drosophila melanogaster strain pdm3-GFP mixed sex prepupa at white prepupa stage whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster pdm3 | ENCBS253NLU | ENCGM052CJI | ENCAB728YTO | ENCLB844AWF |
| 3 | 1 | Drosophila melanogaster strain pdm3-GFP mixed sex prepupa at white prepupa stage whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster pdm3 | ENCBS027YWK | ENCGM052CJI | ENCAB728YTO | ENCLB518FUG |
| 2 | 1 | Drosophila melanogaster strain pdm3-GFP mixed sex prepupa at white prepupa stage whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster pdm3 | ENCBS638OJT | ENCGM052CJI | ENCAB728YTO | ENCLB468ZEM |