Experiment summary for ENCSR499RVD
doi:10.17989/ENCSR499RVD
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 12 hours
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- Hi-C on A549 cell line treated with 100 nM dexamethasone for 12 hours.
- Treatments
- 100 nM dexamethasone (CHEBI:41879) for 12 hours
- Nucleic acid type
- DNA
- Size range
- >200
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
Genomics of Gene Regulation Project
- Lab
- Tim Reddy, Duke
- Award
- U01HG007900 (Tim Reddy, Duke)
- Project
- GGR
- External resources
- Aliases
- tim-reddy:hic_dex.t12
- Date submitted
- November 21, 2016
- Date released
- November 23, 2016
- Treatment Time Series
- ENCSR842RTB , ENCSR435JUA
- Submitter comment
- This dataset cannot be processed with version 1.15.1 of the Hi-C pipeline due to a convergence issue during hic creation.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 2 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS681LUH | ENCLB995AFN |
| 2 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS363RMQ | ENCLB591SFK |
| 3 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS453DQV | ENCLB195PDF |
| 3 | 2 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS453DQV | ENCLB310TDE |
| 1 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS681LUH | ENCLB870JCZ |
| 2 | 2 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS363RMQ | ENCLB023XYB |
| 4 | 1 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS141FQJ | ENCLB729NDZ |
| 4 | 2 | Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 12 hours | ENCBS141FQJ | ENCLB981OUL |