Experiment summary for ENCSR460DKJ
doi:10.17989/ENCSR460DKJ
Summary
- Status
- released
- Assay
- ATAC-seq
- Biosample summary
- Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 3 days
- Biosample Type
- primary cell
- Replication type
- anisogenic
- Description
- ATAC-seq on primary keratinocytes in day 3.5 of differentiation
- Treatments
- 1.2 mM calcium (CHEBI:86158) for 3 days
- Nucleic acid type
- DNA
- RNA integrity number
- 7.2 [2-5]7.2 [2-1]9 [1-1]9 [1-2]7.2 [2-3]9 [1-3]9 [1-4]7.2 [2-4]9 [1-5]9 [1-6]7.2 [2-2]
- Platform
- Illumina HiSeq 4000
Attribution
Genomics of Gene Regulation Project
- Lab
- Will Greenleaf, Stanford
- Award
- U01HG007919 (Michael Snyder, Stanford)
- Project
- GGR
- External resources
- Aliases
- michael-snyder:ggr-skin-atacseq-day35
- Date submitted
- January 27, 2017
- Date released
- October 10, 2017
- Treatment Time Series
- ENCSR968JDE
- Annotation (gkmsvm-model)
Anisogenic replicates
Anisogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 2 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS408RGJ | ENCLB676EPF |
| 2 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS408RGJ | ENCLB655ODB |
| 1 | 1 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS257OKQ | ENCLB497UOW |
| 1 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS257OKQ | ENCLB521NFC |
| 2 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS408RGJ | ENCLB724FGU |
| 1 | 3 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS257OKQ | ENCLB225XVU |
| 1 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS257OKQ | ENCLB989KEL |
| 2 | 4 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS408RGJ | ENCLB921NUM |
| 1 | 5 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS257OKQ | ENCLB329GHI |
| 1 | 6 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS257OKQ | ENCLB824NWT |
| 2 | 2 | Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days | ENCBS408RGJ | ENCLB577OSB |