Experiment summary for ENCSR456YDF
doi:10.17989/ENCSR456YDF
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- cey-2
- Biosample summary
- Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) whole organism hermaphrodite L4 larva genetically modified (insertion) using bombardment targeting C. elegans cey-2
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing CEY-2-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- E-Gel
- Platform
- Illumina Genome Analyzer IIx
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CEY-2-OP358-L4
- Date submitted
- July 30, 2015
- Date released
- November 22, 2017
- Submitter comment
- This experiment was completed during modENCODE and has lower read depth than the current modERN standard.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) hermaphrodite L4 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans cey-2 | ENCBS010HMI | ENCGM405FBA | ENCAB435FBQ | ENCLB380UHI |
| 2 | 2 | Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) hermaphrodite L4 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans cey-2 | ENCBS010HMI | ENCGM405FBA | ENCAB435FBQ | ENCLB462OET |
| 3 | 1 | Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) hermaphrodite L4 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans cey-2 | ENCBS726HQD | ENCGM405FBA | ENCAB435FBQ | ENCLB974NVF |
| 1 | 1 | Caenorhabditis elegans strain OP358 (unc-119(tm4063) III; wgIs358) hermaphrodite L4 larva whole organism genetically modified (insertion) using bombardment targeting C. elegans cey-2 | ENCBS813HCI | ENCGM405FBA | ENCAB435FBQ | ENCLB405ERS |