Experiment summary for ENCSR456GSL
doi:10.17989/ENCSR456GSL
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- unc-120
- Biosample summary
- Caenorhabditis elegans strain OP659 (unc-119(tm4063) III; wgIs659) whole organism mixed stage (embryo) 3 hours post synchronization using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans unc-120
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing UNC-120-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:UNC-120-OP659-EM
- Date submitted
- October 4, 2016
- Date released
- November 6, 2017
- Submitter comment
- ENCFF729QXO, ENCFF582BGS were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 2 | 1 | Caenorhabditis elegans strain OP659 (unc-119(tm4063) III; wgIs659) mixed sex mixed stage (embryo) 3 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans unc-120 | ENCBS469SCG | ENCGM392NUY | ENCAB728YTO | ENCLB704HZX |
| 1 | 1 | Caenorhabditis elegans strain OP659 (unc-119(tm4063) III; wgIs659) mixed sex mixed stage (embryo) 3 hours post synchronization using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans unc-120 | ENCBS191BCY | ENCGM392NUY | ENCAB728YTO | ENCLB428AOJ |