Experiment summary for ENCSR420NDH
doi:10.17989/ENCSR420NDH
Summary
- Status
- released
- Assay
- whole genome sequencing assay (WGS)
- Biosample summary
- Homo sapiens transverse colon tissue female adult (51 years)
- Biosample Type
- tissue
- Replication type
- unreplicated
- Description
- The data contained in this experiment correspond to Illumina-based whole genome shotgun sequencing of EN-TEX donor ENCDO271OUW, a 51 year old female. There are two libraries: PCR-based (9-cycle, ENCLB659IQW) and PCR-free (ENCLB898JVB), both sequenced on multiple lanes to a combined depth of ~ 60X in PE125 format.
- Nucleic acid type
- DNA
- RNA integrity number
- 2.3
- Fragmentation methods
- see document
- Platform
- Illumina NextSeq 500, Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Thomas Gingeras, CSHL
- Award
- U54HG007004 (Thomas Gingeras, CSHL)
- Project
- ENCODE
- External resources
- Date submitted
- April 12, 2016
- Date released
- April 18, 2016
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Homo sapiens female adult (51 years) transverse colon tissue | ENCBS999VTF | ENCLB898JVB |
| 1 | 2 | Homo sapiens female adult (51 years) transverse colon tissue | ENCBS999VTF | ENCLB659IQW |