Experiment summary for ENCSR418YJE

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Drosophila melanogaster VK00037 whole organism prepupa genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG3919-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:CG3919-GFP
Date submitted
April 10, 2016
Date released
July 6, 2016
Submitter comment
ENCFF245OAK, ENCFF237FAJ, ENCFF137YVN, ENCFF280WJA were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
21strain CG3919-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG3919ENCBS246OQVENCGM506OPHENCAB728YTOENCLB273LYJ
11strain CG3919-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG3919ENCBS228GZCENCGM506OPHENCAB728YTOENCLB883ZOF
31strain CG3919-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG3919ENCBS282YKIENCGM506OPHENCAB728YTOENCLB957PER