1. Experiments
  2. ChIP-seq
  3. Drosophila melanogaster
  4. whole organism

Experiment summary for ENCSR418YJE

doi:10.17989/ENCSR418YJE

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CG3919
Biosample summary
Drosophila melanogaster strain CG3919-GFP whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG3919
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing CG3919-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:CG3919-GFP
Date submitted
April 10, 2016
Date released
July 6, 2016
Submitter comment
ENCFF245OAK, ENCFF237FAJ, ENCFF137YVN, ENCFF280WJA were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Drosophila melanogaster strain CG3919-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG3919ENCBS246OQVENCGM506OPHENCAB728YTOENCLB273LYJ
11Drosophila melanogaster strain CG3919-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG3919ENCBS228GZCENCGM506OPHENCAB728YTOENCLB883ZOF
31Drosophila melanogaster strain CG3919-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster CG3919ENCBS282YKIENCGM506OPHENCAB728YTOENCLB957PER

Files

Filter files

File format
Output type
Replicates

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