Experiment summary for ENCSR414CQB

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens A549 treated with 100 nM dexamethasone for 12 hours
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours.
Treatments
100 nM dexamethasone (CHEBI:41879) for 12 hours
Nucleic acid type
DNA
Library starting quantity
7ng
Size range
>200
Fragmentation methods
sonication (Bioruptor Twin)
Size selection method
dual SPRI
Controls

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:CTCF.t12
Date submitted
December 15, 2016
Date released
December 20, 2016
Treatment Time Series
ENCSR738NGQ 

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11A549 cell line treated with 100 nM dexamethasone for 12 hoursENCBS321WEQENCAB809HPRENCLB259JYM
21A549 cell line treated with 100 nM dexamethasone for 12 hoursENCBS628PABENCAB809HPRENCLB988QSD
31A549 cell line treated with 100 nM dexamethasone for 12 hoursENCBS490HNDENCAB809HPRENCLB558LYR