Experiment summary for ENCSR411OOP
doi:10.17989/ENCSR411OOP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- atf-7
- Biosample summary
- Caenorhabditis elegans strain OP638 (unc-119(tm4063) III; wgIs638) whole organism young adult at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans atf-7
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing ATF-7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:ATF-7-OP638-yAd
- Date submitted
- October 5, 2017
- Date released
- November 6, 2017
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 3 | 1 | Caenorhabditis elegans strain OP638 (unc-119(tm4063) III; wgIs638) mixed sex young adult at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans atf-7 | ENCBS241KUP | ENCGM717MPM | ENCAB728YTO | ENCLB519FGH |
| 2 | 1 | Caenorhabditis elegans strain OP638 (unc-119(tm4063) III; wgIs638) mixed sex young adult at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans atf-7 | ENCBS864PBB | ENCGM717MPM | ENCAB728YTO | ENCLB086JVB |