Experiment summary for ENCSR410MDC
doi:10.17989/ENCSR410MDC
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens GM12878
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- MboI primary+replicate GM12878 experiment
- Nucleic acid type
- DNA
- Library starting quantity
- 5000000cells [1-3]5000000cells [1-8]5000000cells [1-11]5000000cells [1-16]5000000cells [1-17]5000000cells [9-1]1000000cells [1-1]1000000cells [1-2]5000000cells [1-7]5000000cells [1-12]5000000cells [1-14]5000000cells [7-1]5000000cells [7-2]5000000cells [1-9]10000000cells [2-1]5000000cells [3-1]5000000cells [4-1]5000000cells [5-1]5000000cells [6-1]5000000cells [1-5]5000000cells [1-10]5000000cells [1-13]5000000cells [1-18]5000000cells [8-1]5000000cells [1-4]5000000cells [1-6]5000000cells [1-15]5000000cells [5-2]5000000cells [9-2]
- Size range
- 300-500
- Fragmentation methods
- chemical (MboI restriction)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000, Illumina HiSeq 2500
Attribution
ENCODE4 project
- Lab
- Erez Aiden, Baylor
- Award
- UM1HG009375 (Erez Aiden, Baylor)
- Project
- ENCODE
- External resources
- Aliases
- erez-aiden:experiment-mboi-magic-biorep
- Date submitted
- October 6, 2017
- Date released
- October 30, 2018
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 3 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB586GZK |
| 1 | 8 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB239DIW |
| 1 | 11 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB724EFO |
| 1 | 16 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB053STM |
| 1 | 17 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB625QZJ |
| 9 | 1 | Homo sapiens GM12878 cell line | ENCBS540DKD | ENCLB370WFY |
| 1 | 1 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB017OZO |
| 1 | 2 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB573OGZ |
| 1 | 7 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB476GOI |
| 1 | 12 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB675CPY |
| 1 | 14 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB414BNZ |
| 7 | 1 | Homo sapiens GM12878 cell line | ENCBS886YKM | ENCLB918VHF |
| 7 | 2 | Homo sapiens GM12878 cell line | ENCBS886YKM | ENCLB323PAW |
| 1 | 9 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB732KOD |
| 2 | 1 | Homo sapiens GM12878 cell line | ENCBS538MCC | ENCLB420YBU |
| 3 | 1 | Homo sapiens GM12878 cell line | ENCBS926QYK | ENCLB177NCE |
| 4 | 1 | Homo sapiens GM12878 cell line | ENCBS197KWD | ENCLB955CQY |
| 5 | 1 | Homo sapiens GM12878 cell line | ENCBS603ZPO | ENCLB685PJB |
| 6 | 1 | Homo sapiens GM12878 cell line | ENCBS892YZW | ENCLB916ZDN |
| 1 | 5 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB032JCQ |
| 1 | 10 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB715IIE |
| 1 | 13 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB823LWW |
| 1 | 18 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB340GDV |
| 8 | 1 | Homo sapiens GM12878 cell line | ENCBS985PRF | ENCLB575VUZ |
| 1 | 4 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB311IGB |
| 1 | 6 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB277OEE |
| 1 | 15 | Homo sapiens GM12878 cell line | ENCBS386THJ | ENCLB403CIH |
| 5 | 2 | Homo sapiens GM12878 cell line | ENCBS603ZPO | ENCLB648XSK |
| 9 | 2 | Homo sapiens GM12878 cell line | ENCBS540DKD | ENCLB993CMA |