Experiment summary for ENCSR399DAW
doi:10.17989/ENCSR399DAW
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- net
- Biosample summary
- Drosophila melanogaster strain net-GFP whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster net
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing net-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:net-GFP
- Date submitted
- August 2, 2016
- Date released
- September 29, 2016
- Submitter comment
- ENCFF100AFJ, ENCFF590TWH, ENCFF018XBL, ENCFF797GHW were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Drosophila melanogaster strain net-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster net | ENCBS169UTG | ENCGM566JTZ | ENCAB728YTO | ENCLB594YFI |
| 3 | 1 | Drosophila melanogaster strain net-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster net | ENCBS007JAI | ENCGM566JTZ | ENCAB728YTO | ENCLB779MQI |
| 4 | 1 | Drosophila melanogaster strain net-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster net | ENCBS882TIM | ENCGM566JTZ | ENCAB728YTO | ENCLB781ADQ |