Experiment summary for ENCSR398UCM
doi:10.17989/ENCSR398UCM
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NCrl hindbrain tissue embryo (11.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 11.5 day (e11.5) mouse hindbrain
- Nucleic acid type
- DNA
- Size range
- 180-500
- Extraction method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E11_5_HB
- Date submitted
- March 13, 2014
- Date released
- June 30, 2014
- Organism Development Series
- ENCSR839HKP
- Reference Epigenome
- ENCSR501OPC
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) hindbrain tissue | ENCBS199NDR | ENCLB239NLW |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) hindbrain tissue | ENCBS976DPO | ENCLB460GXJ |
| 1 | 2 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) hindbrain tissue | ENCBS199NDR | ENCLB560UXD |
| 2 | 2 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) hindbrain tissue | ENCBS976DPO | ENCLB563CUJ |