Experiment summary for ENCSR388MJH
doi:10.17989/ENCSR388MJH
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- ceh-79
- Biosample summary
- Caenorhabditis elegans strain OP553 (unc-119(tm4063) III; wgIs553) whole organism young adult 66 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans ceh-79
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing CEH-79-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:CEH-79-OP553-yAd
- Date submitted
- October 5, 2017
- Date released
- November 6, 2017
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP553 (unc-119(tm4063) III; wgIs553) mixed sex young adult 66 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans ceh-79 | ENCBS509QBP | ENCGM547TJM | ENCAB728YTO | ENCLB875UEI |
| 2 | 1 | Caenorhabditis elegans strain OP553 (unc-119(tm4063) III; wgIs553) mixed sex young adult 66 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans ceh-79 | ENCBS821UTY | ENCGM547TJM | ENCAB728YTO | ENCLB958NBG |