Experiment summary for ENCSR385CDF
doi:10.17989/ENCSR385CDF
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CTCF
- Biosample summary
- Homo sapiens HCT116 genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, (insertion) using CRISPR targeting H. sapiens BRD4
- Biosample Type
- cell line
- Replication type
- unreplicated
- Nucleic acid type
- DNA
- Size range
- 200-600
- Platform
- Illumina NextSeq 500
- Controls
Attribution
ENCODE4 project
- Lab
- Bradley Bernstein, Broad
- Award
- UM1HG009390 (Bradley Bernstein, Broad)
- Project
- ENCODE
- External resources
- Aliases
- bradley-bernstein:Project Element 7446
- Date released
- July 21, 2022
- Gene Silencing Series
- ENCSR081OCI
- Annotation (physical modeling)
- Annotation (BPNet-model)
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 | ENCBS981HND | ENCGM126ANC, ENCGM628AIR | ENCAB719MQZ | ENCLB032MQG |
| 1 | 2 | Homo sapiens HCT116 cell line genetically modified (insertion) using CRISPR inserting O. sativa LOC4335696, genetically modified (insertion) using CRISPR targeting H. sapiens BRD4 | ENCBS981HND | ENCGM126ANC, ENCGM628AIR | ENCAB719MQZ | ENCLB707IVN |