1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. K562

Experiment summary for ENCSR359NFW

doi:10.17989/ENCSR359NFW

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
USF2
Biosample summary
Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF2
Biosample Type
cell line
Replication type
isogenic
Description
eGFP-USF2 ChIP-seq on human K562
Nucleic acid type
DNA
Size range
200-800
Fragmentation methods
sonication (Bioruptor generic)
Size selection method
SPRI beads
Controls

Attribution

ENCODE3 project
Lab
Kevin White, UChicago
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
kevin-white:USF2_K562_CRISPR
Date submitted
April 4, 2016
Date released
June 13, 2016
Annotation (gkmsvm-model)
Annotation (physical modeling)
Annotation (BPNet-model)
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens USF2ENCBS105RVNENCGM042TVTENCAB728YTOENCLB386PFE
11Homo sapiens K562 cell line genetically modified (insertion) using CRISPR targeting H. sapiens USF2ENCBS266WUAENCGM042TVTENCAB728YTOENCLB892MQS

Files

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