Experiment summary for ENCSR359LOD

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens PC-3
Biosample Type
cell line
Replication type
isogenic
Nucleic acid type
DNA
Library starting quantity
5.542ng [1-1]20.638ng [2-1]
Size range
300-600
Lysis method
see document
Extraction method
see document
Fragmentation methods
sonication (generic) [1-1]none [2-1]
Size selection method
see document
Strand specificity
Non-strand-specific
Controls

Attribution

ENCODE3 project
Lab
Bradley Bernstein, Broad
Award
U54HG006991 (Bradley Bernstein, Broad)
Project
ENCODE
External resources
Aliases
bradley-bernstein:Project Element 942
Date submitted
October 24, 2014
Date released
October 19, 2017
Related datasets
ENCSR743BGS 
Reference epigenome for human PC-3 cell line
Submitter comment
This experiment is being used in the ENCODE-DREAM Transcription Factor Binding Site Prediction Challenge (https://www.synapse.org/#!Synapse:syn6131484/wiki/400026). The files will be unavailable until after the challenge completes on 09-30-16. UPDATE: There will be a second round to the challenge that is expected to end on 01-11-2017
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag DREAM

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11PC-3 cell lineENCBS451OVMENCAB000AXXENCLB622RIN
21PC-3 cell lineENCBS596CTTENCAB000AXXENCLB324KFH