Experiment summary for ENCSR354KAS
doi:10.17989/ENCSR354KAS
Summary
- Status
- released
- Assay
- eCLIP (Control eCLIP)
- Control type
- mock input
- Biosample summary
- Homo sapiens HepG2
- Biosample Type
- cell line
- Replication type
- unreplicated
- Description
- eCLIP control experiment on HepG2 against HNRNPK
- Nucleic acid type
- RNA
- Size range
- 175-300
- Fragmentation methods
- see document
- Size selection method
- agarose gel extraction
- Strand specificity
- Strand-specific
- Platform
- Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Gene Yeo, UCSD
- Award
- U54HG007005 (Brenton Graveley, UConn)
- Project
- ENCODE
- External resources
- Aliases
- gene-yeo:206-control
- Date submitted
- March 22, 2016
- Date released
- November 9, 2015
- Submitter comment
- Fastq files ENCFF060FDD and ENCFF555OUH contain reads of mixed lengths. Read length followed by number of reads: ENCFF060FDD (25, 721170), (35, 139260), (36, 157611), (37, 169006), (38, 175666), (39, 207686), (40, 216574), (41, 213634), (42, 233278), (43, 227226), (44, 228897), (45, 241446), (46, 236535), (47, 251463), (48, 346432), (49, 623536), (50, 1245032), (51, 4808851); and ENCFF555OUH (30, 848277), (31, 155642), (32, 167820), (33, 174310), (34, 206695), (35, 215083), (36, 212409), (37, 231552), (38, 225627), (39, 226056), (40, 236745), (41, 238149), (42, 247946), (43, 319912), (44, 661686), (45, 1317716), (46, 4757678).
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Homo sapiens HepG2 cell line | ENCBS864WAF | ENCLB068HLW |