Experiment summary for ENCSR346DCU
doi:10.17989/ENCSR346DCU
Summary
- Status
- released
- Assay
- HiC (in situ Hi-C)
- Biosample summary
- Homo sapiens LNCaP clone FGC
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- HiC experiment done on LNCaP clone FGC
- Nucleic acid type
- DNA
- Fragmentation methods
- chemical (HindIII restriction)
- Platform
- Illumina HiSeq 2500, Illumina HiSeq 2000
Attribution
ENCODE3 project
- Lab
- Job Dekker, UMass
- Award
- U54HG007010 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- References
- Date submitted
- April 25, 2016
- Date released
- May 13, 2016
- Submitter comment
- Due to the sequencing depth of the dataset the following steps of the pipeline were excluded: arrowhead, hiccups, and delta. This dataset therefore does not have long range chromatin interactions, chromatin stripes, and topologically associated domains outputs.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
---|---|---|---|---|
1 | 1 | Homo sapiens LNCaP clone FGC cell line | ENCBS235TSM | ENCLB191OGC |
2 | 1 | Homo sapiens LNCaP clone FGC cell line | ENCBS418ENC | ENCLB473XWD |