Experiment summary for ENCSR346DCU

doi:10.17989/ENCSR346DCU

Summary

Status
released
Assay
HiC (in situ Hi-C)
Biosample summary
Homo sapiens LNCaP clone FGC
Biosample Type
cell line
Replication type
isogenic
Description
HiC experiment done on LNCaP clone FGC
Nucleic acid type
DNA
Fragmentation methods
chemical (HindIII restriction)

Attribution

ENCODE3 project
Lab
Job Dekker, UMass
Award
U54HG007010 (John Stamatoyannopoulos, UW)
Project
ENCODE
External resources
Date submitted
April 25, 2016
Date released
May 13, 2016
Submitter comment
Due to the sequencing depth of the dataset the following steps of the pipeline were excluded: arrowhead, hiccups, and delta. This dataset therefore does not have long range chromatin interactions, chromatin stripes, and topologically associated domains outputs.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv1Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens LNCaP clone FGC cell lineENCBS235TSMENCLB191OGC
21Homo sapiens LNCaP clone FGC cell lineENCBS418ENCENCLB473XWD