Experiment summary for ENCSR344GSM
doi:10.17989/ENCSR344GSM
Summary
- Status
- released
- Assay
- whole-genome shotgun bisulfite sequencing (WGBS)
- Biosample summary
- Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue embryo (14.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- Whole genome bisulfite-seq on embryonic 14.5 day mouse midbrain
- Nucleic acid type
- DNA
- Size range
- 180-500
- Extraction method
- QIAGEN DNeasy Blood & Tissue Kit
- Fragmentation methods
- shearing (Covaris S2)
- Size selection method
- Sera-mag SpeedBeads
- Platform
- Illumina HiSeq 2500
Attribution
ENCODE3 project
- Lab
- Joe Ecker, Salk
- Award
- U54HG006997 (Bing Ren, UCSD)
- Project
- ENCODE
- External resources
- Aliases
- joe-ecker:E14_5_MB
- Date submitted
- March 12, 2014
- Date released
- June 30, 2014
- Organism Development Series
- ENCSR414HVF
- Reference Epigenome
- ENCSR649KUM
- Tags
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) midbrain tissue | ENCBS003AAA | ENCLB278IIN |
| 2 | 1 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) midbrain tissue | ENCBS015AAA | ENCLB068GZH |
| 1 | 2 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) midbrain tissue | ENCBS003AAA | ENCLB344FMH |
| 2 | 2 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) midbrain tissue | ENCBS015AAA | ENCLB377QBI |
| 2 | 3 | Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) midbrain tissue | ENCBS015AAA | ENCLB078NRZ |