Experiment summary for ENCSR334YYP
doi:10.17989/ENCSR334YYP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- Y116A8C.19
- Biosample summary
- Caenorhabditis elegans strain OP532 (unc-119(tm4063) III; wgIs532) whole organism hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans Y116A8C.19
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing Y116A8C.19-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:Y116A8C.19-OP532-L1
- Date submitted
- July 29, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF754RUP, ENCFF207ZCM, ENCFF401UNR, ENCFF365AGS were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP532 (unc-119(tm4063) III; wgIs532) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans Y116A8C.19 | ENCBS402JNA | ENCGM349HNM | ENCAB728YTO | ENCLB792UOE |
| 2 | 1 | Caenorhabditis elegans strain OP532 (unc-119(tm4063) III; wgIs532) hermaphrodite L1 larva 6 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans Y116A8C.19 | ENCBS371ZNI | ENCGM349HNM | ENCAB728YTO | ENCLB412YUU |