Experiment summary for ENCSR333PZV

Summary

Status
released
Assay
eCLIP (Control eCLIP)
Control type
mock input
Biosample summary
Homo sapiens HepG2
Biosample Type
cell line
Replication type
unreplicated
Description
eCLIP control experiment on HepG2 against TIA1
Nucleic acid type
RNA
Size range
175-300
Fragmentation methods
see document
Size selection method
agarose gel extraction
Strand specificity
Strand-specific

Attribution

ENCODE3 project
Lab
Gene Yeo, UCSD
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
gene-yeo:215-control
Date submitted
March 22, 2016
Date released
July 15, 2015
Submitter comment
Fastq files ENCFF678FPJ and ENCFF805EWQ contain reads of mixed lengths. Read length followed by number of reads: ENCFF678FPJ (25, 479045), (35, 132251), (36, 166855), (37, 202751), (38, 216211), (39, 250344), (40, 259465), (41, 257719), (42, 273110), (43, 271711), (44, 258671), (45, 275845), (46, 259516), (47, 269488), (48, 368931), (49, 710109), (50, 1306558), (51, 5899588); and ENCFF805EWQ (30, 622690), (31, 169775), (32, 209547), (33, 222775), (34, 258531), (35, 266011), (36, 263850), (37, 277029), (38, 275455), (39, 261092), (40, 272726), (41, 265999), (42, 271274), (43, 334853), (44, 780324), (45, 1299678), (46, 5806559).
Tags
Search for all Experiment with internal tag ENCORE

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11HepG2 cell lineENCBS751GYXENCLB013TIM