Experiment summary for ENCSR332DSH
doi:10.17989/ENCSR332DSH
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- CG6792
- Biosample summary
- Drosophila melanogaster strain CG6792-GFP whole organism prepupa genetically modified (insertion) using site-specific recombination targeting D. melanogaster Plzf
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing Plzf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:Plzf-GFP
- Date submitted
- April 10, 2016
- Date released
- July 6, 2016
- Submitter comment
- ENCFF612RUT, ENCFF832TXV, ENCFF773VBC, ENCFF676JBJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Drosophila melanogaster strain CG6792-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Plzf | ENCBS895GGB | ENCGM780VUI | ENCAB728YTO | ENCLB618FUD |
3 | 1 | Drosophila melanogaster strain CG6792-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Plzf | ENCBS969JPW | ENCGM780VUI | ENCAB728YTO | ENCLB772JYQ |
1 | 1 | Drosophila melanogaster strain CG6792-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster Plzf | ENCBS900JKQ | ENCGM780VUI | ENCAB728YTO | ENCLB639WXQ |