Experiment summary for ENCSR332DSH

Summary

Status
released
Assay
ChIP-seq
Biosample summary
Drosophila melanogaster strain CG6792-GFP whole organism prepupa genetically modified using site-specific recombination
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq on transgenic flies expressing Plzf-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Size range
200-800
Fragmentation method
sonication (Bioruptor generic)
Size selection method
SPRI
Strand specificity
Non-strand-specific
Controls

Attribution

modERN project
Lab
Kevin White, UChicago
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
Aliases
kevin-white:Plzf-GFP
Date submitted
April 10, 2016
Date released
July 6, 2016
Submitter comment
ENCFF612RUT, ENCFF832TXV, ENCFF773VBC, ENCFF676JBJ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleModificationsAntibodyLibrary
21strain CG6792-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG6792ENCBS895GGBENCGM780VUIENCAB728YTOENCLB618FUD
31strain CG6792-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG6792ENCBS969JPWENCGM780VUIENCAB728YTOENCLB772JYQ
11strain CG6792-GFP mixed sex prepupa whole organism genetically modified (insertion) using site-specific recombination targeting eGFP-CG6792ENCBS900JKQENCGM780VUIENCAB728YTOENCLB639WXQ