Experiment summary for ENCSR323QIP

doi:10.17989/ENCSR323QIP

Summary

Status
released
Assay
HiC (in situ Hi-C)
Biosample summary
Homo sapiens brain pericyte
Biosample Type
primary cell
Replication type
isogenic
Description
HiC experiment done on brain pericyte
Nucleic acid type
DNA
Fragmentation methods
chemical (HindIII restriction)

Attribution

ENCODE3 project
Lab
Job Dekker, UMass
Award
U54HG007010 (John Stamatoyannopoulos, UW)
Project
ENCODE
External resources
Aliases
job-dekker:hic-HBVP
Date submitted
May 26, 2017
Date released
October 2, 2017
Submitter comment
Due to the sequencing depth of the dataset the following steps of the pipeline were excluded: arrowhead, hiccups, and delta. This dataset therefore does not have long range chromatin interactions, chromatin stripes, and topologically associated domains outputs.
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv2

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
21Homo sapiens brain pericyte primary cellENCBS040IIDENCLB294VIS
11Homo sapiens brain pericyte primary cellENCBS305AAAENCLB786JJC