Experiment summary for ENCSR323LIQ
doi:10.17989/ENCSR323LIQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- F52B5.7
- Biosample summary
- Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) whole organism young adult 63 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans F52B5.7
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing F52B5.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:F52B5.7-OP606-yAd
- Date submitted
- October 4, 2016
- Date released
- October 11, 2016
- Submitter comment
- ENCFF082YLL, ENCFF653JHR, ENCFF634VDA, ENCFF834XGQ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans F52B5.7 | ENCBS920OLK | ENCGM206AJM | ENCAB728YTO | ENCLB368ZYS |
1 | 1 | Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans F52B5.7 | ENCBS291STD | ENCGM206AJM | ENCAB728YTO | ENCLB810NUS |