Experiment summary for ENCSR323LIQ

doi:10.17989/ENCSR323LIQ

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
F52B5.7
Biosample summary
Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) whole organism young adult 63 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans F52B5.7
Biosample Type
whole organisms
Replication type
isogenic
Description
ChIP-seq of transgenic worms expressing F52B5.7-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
Nucleic acid type
DNA
Fragmentation methods
sonication (generic microtip)
Size selection method
SPRI beads
Controls

Attribution

modERN project
Lab
Valerie Reinke, Yale
Award
U41HG007355 (Robert Waterston, UW)
Project
modERN
External resources
Aliases
kevin-white:F52B5.7-OP606-yAd
Date submitted
October 4, 2016
Date released
October 11, 2016
Submitter comment
ENCFF082YLL, ENCFF653JHR, ENCFF634VDA, ENCFF834XGQ were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Modifications
Antibody
Library
21Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans F52B5.7ENCBS920OLKENCGM206AJMENCAB728YTOENCLB368ZYS
11Caenorhabditis elegans strain OP606 (unc-119(tm4063) III; wgIs606) mixed sex young adult 63 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans F52B5.7ENCBS291STDENCGM206AJMENCAB728YTOENCLB810NUS