1. Experiments
  2. ChIP-seq
  3. Homo sapiens
  4. LNCAP

Experiment summary for ENCSR315NAC

doi:10.17989/ENCSR315NAC

Summary

Status
released
Assay
ChIP-seq (TF ChIP-seq)
Target
CTCF
Biosample summary
Homo sapiens LNCAP
Biosample Type
cell line
Replication type
isogenic
Description
CTCF ChIP-seq on human LNCAP
Nucleic acid type
DNA
Size range
450-650
Controls

Attribution

ENCODE3 project
Lab
Michael Snyder, Stanford
Award
U54HG006996 (Michael Snyder, Stanford)
Project
ENCODE
External resources
Aliases
michael-snyder:ChIPss-753
Date submitted
July 14, 2017
Date released
June 29, 2017
Annotation (gkmsvm-model)
Annotation (BPNet-model)
Submitter comment
ENCFF523VMP and ENCFF959XOH were revoked because the flowcell was found to be bad. ENCFF863ZTU and ENCFF190SME are their replacements. The original processed files were revoked and will be re-processed with the replacement data.
Tags
Search for all Experiment with internal tag RegulomeDB_1_0Search for all Experiment with internal tag ccre_inputv2Search for all Experiment with internal tag RegulomeDB_2_0Search for all Experiment with internal tag RegulomeDB_2_1Search for all Experiment with internal tag ENCYCLOPEDIAv2Search for all Experiment with internal tag RegulomeDB_2_2

Encyclopedia Integration

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Antibody
Library
11Homo sapiens LNCAP cell lineENCBS535BWOENCAB498PCMENCLB241MDZ
21Homo sapiens LNCAP cell lineENCBS918PKZENCAB498PCMENCLB201WSI

Files

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Output type
Replicates

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