Experiment summary for ENCSR314UMJ

Summary

Status
released
Assay
eCLIP
Target
TRA2A
Biosample summary
Homo sapiens HepG2
Biosample Type
cell line
Replication type
isogenic
Description
eCLIP experiment on HepG2 against TRA2A
Nucleic acid type
RNA
Size range
175-300
Lysis method
see document
Extraction method
see document
Fragmentation methods
see document
Size selection method
agarose gel extraction
Strand specificity
Strand-specific
Controls

Attribution

ENCODE3 project
Lab
Gene Yeo, UCSD
Award
U54HG007005 (Brenton Graveley, UConn)
Project
ENCODE
External resources
Aliases
gene-yeo:218
Date submitted
March 21, 2016
Date released
July 15, 2015
Submitter comment
Fastq files ENCFF267TXP, ENCFF836WPZ, ENCFF253TTK, and ENCFF065AKB contain reads of mixed lengths. Read length followed by number of reads: ENCFF267TXP (28, 35813), (29, 43753), (30, 51270), (31, 58553), (32, 65553), (33, 70114), (34, 71302), (35, 78331), (36, 83396), (37, 89574), (38, 95903), (39, 108796), (40, 118153), (41, 159327), (42, 336815), (43, 831993), (44, 2938097); ENCFF836WPZ (28, 67950), (29, 76539), (30, 85415), (31, 92455), (32, 97270), (33, 99537), (34, 96547), (35, 96846), (36, 98109), (37, 101572), (38, 98538), (39, 103410), (40, 105086), (41, 122050), (42, 198321), (43, 445799), (44, 1399225); ENCFF253TTK (30, 58220), (31, 46478), (32, 54338), (33, 61891), (34, 69450), (35, 73841), (36, 75070), (37, 82001), (38, 87170), (39, 93083), (40, 99256), (41, 113523), (42, 125978), (43, 177367), (44, 409037), (45, 977870), (46, 2632170); and ENCFF065AKB (30, 84837), (31, 77858), (32, 86964), (33, 94508), (34, 99413), (35, 101842), (36, 99222), (37, 99258), (38, 100397), (39, 103713), (40, 100319), (41, 105962), (42, 107859), (43, 131949), (44, 235265), (45, 564618), (46, 1190685).
Tags
Search for all Experiment with internal tag ENCYCLOPEDIAv5Search for all Experiment with internal tag ENCORE

Isogenic replicates

Isogenic replicateTechnical replicateSummaryBiosampleAntibodyLibrary
21HepG2 cell lineENCBS015PACENCAB683DWWENCLB690VOR
11HepG2 cell lineENCBS533IVTENCAB683DWWENCLB718NMZ