Experiment summary for ENCSR313NYZ

doi:10.17989/ENCSR313NYZ

Summary

Status
released
Assay
RAMPAGE
Biosample summary
Homo sapiens foreskin keratinocyte male newborn (2-4 days) treated with 1.2 mM calcium for 2 days
Biosample Type
primary cell
Replication type
anisogenic
Description
RAMPAGE on primary keratinocytes in day 2.5 of differentiation
Treatments
1.2 mM calcium (CHEBI:86158) for 2 days
Nucleic acid type
RNA
RNA integrity number
9 [1-1]8 [2-1]
Size range
300-1000
Extraction method
Qiagen RNA extraction
Strand specificity
unstranded
Controls

Attribution

Genomics of Gene Regulation Project
Lab
Michael Snyder, Stanford
Award
U01HG007919 (Michael Snyder, Stanford)
Project
GGR
External resources
Aliases
michael-snyder:ggr-skin-rampage-day25
Date submitted
December 9, 2016
Date released
April 12, 2018
Treatment Time Series
ENCSR230KWM 
Submitter comment
The current pipeline framework is unable to process the data. Processing will be attempted again once a new version of the pipeline is available.

Anisogenic replicates

Anisogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 daysENCBS924PBKENCLB019ZGI
21Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 daysENCBS024RNHENCLB408JMS