Experiment summary for ENCSR306UKE
doi:10.17989/ENCSR306UKE
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- hmg-4
- Biosample summary
- Caenorhabditis elegans strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) whole organism early embryo (0 hours) using egg bleaching genetically modified (insertion) using bombardment targeting C. elegans hmg-4
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic worms expressing HMG-4-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 4000
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- valerie-reinke:HMG-4_OP660_EE
- Date submitted
- September 17, 2018
- Date released
- September 19, 2018
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
|---|---|---|---|---|---|---|
| 1 | 1 | Caenorhabditis elegans strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (0 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans hmg-4 | ENCBS789RYF | ENCGM580RRV | ENCAB728YTO | ENCLB430OST |
| 2 | 1 | Caenorhabditis elegans strain OP660 (unc-119(tm4063); wgIs660 [hmg-4::TY1::EGFP::3xFLAG + unc-119(+)]) mixed sex early embryo (0 hours) using egg bleaching whole organism genetically modified (insertion) using bombardment targeting C. elegans hmg-4 | ENCBS943VYN | ENCGM580RRV | ENCAB728YTO | ENCLB158JOR |