Experiment summary for ENCSR301SWM
Summary
- Status
- released
- Assay
- siRNA knockdown followed by RNA-seq (siRNA RNA-seq)
- Target
- TCP1
- Biosample summary
- Homo sapiens K562 genetically modified using RNAi
- Biosample Type
- cell line
- Replication type
- isogenic
- Description
- RNA-seq on K562 cells treated with siRNA targeting TCP1.
- Nucleic acid type
- RNA
- Size range
- >200
- Strand specificity
- Non-strand-specific
- Platform
- Illumina HiSeq 2000
- Controls
Attribution
ENCODE3 project
- Lab
- Michael Snyder, Stanford
- Award
- U54HG006996 (Michael Snyder, Stanford)
- Project
- ENCODE
- Aliases
- sherman-weissman:E-K562-TCP1
- Date submitted
- August 9, 2016
- Date released
- January 31, 2017
Isogenic replicates
| Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Library |
|---|---|---|---|---|---|
| 2 | 1 | K562 cell line expressing RNAi targeting TCP1 | ENCBS789DXD | ENCGM752DVQ | ENCLB632UHW |
| 1 | 1 | K562 cell line expressing RNAi targeting TCP1 | ENCBS608LIF | ENCGM752DVQ | ENCLB652MLJ |