Experiment summary for ENCSR295GRP
doi:10.17989/ENCSR295GRP
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- br
- Biosample summary
- Drosophila melanogaster strain br-re-GFP whole organism wandering third instar larva genetically modified (insertion) using site-specific recombination targeting D. melanogaster br
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq on transgenic flies expressing br-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Size range
- 200-800
- Fragmentation methods
- sonication (Bioruptor generic)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Kevin White, UChicago
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:br-RE-GFP
- Date submitted
- July 24, 2015
- Date released
- July 6, 2016
- Submitter comment
- ENCFF823RNL, ENCFF932HAT, ENCFF224JPO, ENCFF091QQO were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
- Factorbook
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
4 | 1 | Drosophila melanogaster strain br-re-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster br | ENCBS873QPK | ENCGM431MXX | ENCAB728YTO | ENCLB832HZA |
3 | 1 | Drosophila melanogaster strain br-re-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster br | ENCBS610GTT | ENCGM431MXX | ENCAB728YTO | ENCLB350DOB |
2 | 1 | Drosophila melanogaster strain br-re-GFP mixed sex wandering third instar larva whole organism genetically modified (insertion) using site-specific recombination targeting D. melanogaster br | ENCBS925VJO | ENCGM431MXX | ENCAB728YTO | ENCLB700PUG |