Experiment summary for ENCSR292QBA
doi:10.17989/ENCSR292QBA
Summary
- Status
- released
- Assay
- DNase-seq
- Biosample summary
- Mus musculus strain B6NCrl midbrain tissue embryo (11.5 days)
- Biosample Type
- tissue
- Replication type
- isogenic
- Description
- DNase-seq on 11.5 day (e11.5) embryonic mouse midbrain
- Nucleic acid type
- DNA
Attribution
ENCODE3 project
- Lab
- John Stamatoyannopoulos, UW
- Award
- U54HG007010 (John Stamatoyannopoulos, UW)
- Project
- ENCODE
- External resources
- Date submitted
- June 29, 2015
- Date released
- October 14, 2015
- Reference Epigenome
- ENCSR843IAS
- Organism Development Series
- ENCSR072DEA
- Annotation (gkmsvm-model)
- Submitter comment
- A dispersion model could not be successfully generated for this dataset, so the DNase-seq pipeline's footprinting step was skipped for this analysis.
- ENCLB342ZJE submitter comment
- This library has sub-optimal fragment distribution and library complexity
- Tags
- Registry of cCREs
Encyclopedia Integration
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Library |
|---|---|---|---|---|
| 1 | 1 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) midbrain tissue | ENCBS994RMB | ENCLB342ZJE |
| 2 | 1 | Mus musculus strain B6NCrl mixed sex embryo (11.5 days) midbrain tissue | ENCBS677BKM | ENCLB055DAX |