Experiment summary for ENCSR292NVQ
doi:10.17989/ENCSR292NVQ
Summary
- Status
- released
- Assay
- ChIP-seq (TF ChIP-seq)
- Target
- hlh-12
- Biosample summary
- Caenorhabditis elegans strain OP538 (unc-119(tm4063) III; wgIs538) whole organism hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage genetically modified (insertion) using bombardment targeting C. elegans hlh-12
- Biosample Type
- whole organisms
- Replication type
- isogenic
- Description
- ChIP-seq of transgenic worms expressing HLH-12-eGFP fusion proteins. The IP was performed using an anti-GFP antibody.
- Nucleic acid type
- DNA
- Fragmentation methods
- sonication (generic microtip)
- Size selection method
- SPRI beads
- Platform
- Illumina HiSeq 2500
- Controls
Attribution
modERN project
- Lab
- Valerie Reinke, Yale
- Award
- U41HG007355 (Robert Waterston, UW)
- Project
- modERN
- External resources
- Aliases
- kevin-white:HLH-12-OP538-yAd
- Date submitted
- July 29, 2015
- Date released
- May 10, 2016
- Submitter comment
- ENCFF367NVV, ENCFF217OHV, ENCFF157GFO, ENCFF484KOL were revoked because a software bug accidentally truncated the file content. The submitters will provide replacement files.
Isogenic replicates
Isogenic replicate | Technical replicate | Summary | Biosample | Modifications | Antibody | Library |
---|---|---|---|---|---|---|
2 | 1 | Caenorhabditis elegans strain OP538 (unc-119(tm4063) III; wgIs538) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans hlh-12 | ENCBS803EZP | ENCGM648OAV | ENCAB728YTO | ENCLB536VHL |
1 | 1 | Caenorhabditis elegans strain OP538 (unc-119(tm4063) III; wgIs538) hermaphrodite young adult 64 hours post synchronization at L1 larva starved after bleaching stage whole organism genetically modified (insertion) using bombardment targeting C. elegans hlh-12 | ENCBS246BHR | ENCGM648OAV | ENCAB728YTO | ENCLB892KXV |