Experiment summary for ENCSR288YMH

doi:10.17989/ENCSR288YMH

Summary

Status
released
Assay
ATAC-seq
Biosample summary
Homo sapiens A549 treated with 100 nM dexamethasone (agonist) for 4 hours
Biosample Type
cell line
Replication type
isogenic
Description
ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours.
Treatments
100 nM dexamethasone (CHEBI:41879) for 4 hours
Nucleic acid type
DNA
Size range
>200
Lysis method
0.01% digitonin
Fragmentation methods
chemical (Nextera tagmentation)
Size selection method
AMPure XP bead purification

Attribution

Genomics of Gene Regulation Project
Lab
Tim Reddy, Duke
Award
U01HG007900 (Tim Reddy, Duke)
Project
GGR
External resources
Aliases
tim-reddy:A549.atacseq.dex.04h
Date submitted
March 28, 2018
Date released
April 23, 2018
Treatment Time Series
ENCSR385LRX 
Annotation (gkmsvm-model)

Isogenic replicates

Isogenic replicate
Technical replicate
Summary
Biosample
Library
11Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 4 hoursENCBS360YMBENCLB330STL
21Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 4 hoursENCBS402NSIENCLB846KGA
31Homo sapiens A549 cell line treated with 100 nM dexamethasone (agonist) for 4 hoursENCBS006KFZENCLB804WMR